Journal: eLife
Article Title: Heat shock factor regulation of antimicrobial peptides expression suggests a conserved defense mechanism induced by febrile temperature in arthropods
doi: 10.7554/eLife.101460
Figure Lengend Snippet: ( A ) Venn diagram showing the downregulated genes by RNA-Seq. RNA-seq was performed 24 hr after WSSV infection (NCBI SRA database accession number PRJNA1110613). ( B ) Heatmap showing the differential expression of downregulated genes encoding potential effector molecules. The color bar indicates the gradient of normalized expression levels. ( C ) mRNA transcription levels of SWD in hemocytes and gills. mRNA transcription levels of SWD in the hemocytes and gills of LvHSF1-silenced shrimp under WSSV challenge. ( D ) Dual-luciferase reporter assays. Dual-luciferase reporter assays were performed to analyze the effects of overexpression of LvHSF1 on the promoter activities of SWD in Drosophila S2 cells in a dose-dependent manner. Protein expression of LvHSF1 was detected with anti-HA Ab, with β-actin used as a protein loading control (panel d). ( E ) Schematic diagram of the SWD promoter regions. Schematic diagram of the SWD promoter regions in the luciferase reporter gene constructs. The HSF1 binding motif sites are shown in red rectangles. ( F ) Dual-luciferase reporter assays with mutated HSF1 binding motifs. Dual-luciferase reporter assays were performed to analyze the effects of overexpression of LvHSF1 on the promoter activities of SWD with mutated HSF1 binding motifs. Protein expression of LvHSF1 was detected with anti-HA Ab, with β-actin used as a protein loading control (panel f). ( G ) Analysis of the SWD promoter. The HSF1 binding site was analyzed using the online JASPAR database. ( H ) EMSA assay. LvHSF1 protein interaction with HSF1 binding sites from the SWD promoter was analyzed in vitro by EMSA assay. Competition assays were performed in the presence of excess unlabeled probes. Statistical significance was calculated using the Student’s t -test (**p<0.01, *p<0.05). All experiments were conducted with three biological replicates, consistently yielding similar results. Figure 5—source data 1. Numerical source data for graphs shown in . Figure 5—source data 2. TIF file with original western blots and boxes indicating the relevant bands shown in . Figure 5—source data 3. Original files for western blot analysis displayed in .
Article Snippet: Drosophila S2 cells (ATCC CRL-1963) were cultured at 28 °C in Schneider’s Insect Medium (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% fetal bovine serum (Gibco, Grand Island, NY).
Techniques: RNA Sequencing, Infection, Quantitative Proteomics, Expressing, Luciferase, Over Expression, Control, Construct, Binding Assay, In Vitro, Western Blot